MOAB quick-start-guide - Revision history

Yossib: /* Applications */

2018-05-06T07:15:46Z

Applications

← Older revision		Revision as of 07:15, 6 May 2018
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	* For building applications using EasyBuild:		* For building applications using EasyBuild:
	*# Run <pre style="color: red">module load EasyBuild/3.4.1</pre>		*# Run <pre style="color: red">module load EasyBuild/3.4.1</pre>
	*# Follow instructions on [~~EasyBuild CLI documentation](~~http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)		*# Follow instructions on [http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html EasyBuild CLI documentation]

	== Storage and directories ==		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.

Yossib: /* Applications */

2018-05-06T07:14:28Z

Applications

← Older revision		Revision as of 07:14, 6 May 2018
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	Applications use is configured through the “module” command:		Applications use is configured through the “module” command:
	* Available applications: <pre style="color: red">module avail</pre>		* Available applications: <pre style="color: red">module avail</pre>
	* Brief application user guide: ``module help <application>/<version>``		* Brief application user guide: <pre style="color: red">module help <application>/<version></pre>
	* For building applications using EasyBuild:		* For building applications using EasyBuild:
	*# Run ``module load EasyBuild/3.4.1``		*# Run <pre style="color: red">module load EasyBuild/3.4.1</pre>
	*# Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)		*# Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)

	== Storage and directories ==		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.

Yossib: /* Applications */

2018-05-06T07:13:58Z

Applications

← Older revision		Revision as of 07:13, 6 May 2018
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	== Applications ==		== Applications ==
	Applications use is configured through the “module” command:		Applications use is configured through the “module” command:
	* Available applications: ``module avail``		* Available applications: <pre style="color: red">module avail</pre>
	* Brief application user guide: ``module help <application>/<version>``		* Brief application user guide: ``module help <application>/<version>``
	* For building applications using EasyBuild:		* For building applications using EasyBuild:

Oshani at 10:05, 3 May 2018

2018-05-03T10:05:32Z

← Older revision		Revision as of 10:05, 3 May 2018
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	==
	= MOAB Quick Start Guide =		= MOAB Quick Start Guide =

Oshani: /* MOAB Quick Start Guide */

2018-05-03T10:04:58Z

MOAB Quick Start Guide

← Older revision		Revision as of 10:04, 3 May 2018
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			==
	= MOAB Quick Start Guide =		= MOAB Quick Start Guide =

Yossib at 10:00, 3 May 2018

2018-05-03T10:00:57Z

← Older revision		Revision as of 10:00, 3 May 2018
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	== Storage and directories ==		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.

	~~" ==~~

Yossib at 10:00, 3 May 2018

2018-05-03T10:00:42Z

← Older revision		Revision as of 10:00, 3 May 2018
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	== Storage and directories ==		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.

			" ==

Borg at 07:56, 22 February 2018

2018-02-22T07:56:30Z

← Older revision		Revision as of 07:56, 22 February 2018
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	* Brief application user guide: ``module help <application>/<version>``		* Brief application user guide: ``module help <application>/<version>``
	* For building applications using EasyBuild:		* For building applications using EasyBuild:
	* Run ``module load EasyBuild/3.4.1``		*# Run ``module load EasyBuild/3.4.1``
	* Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)		*# Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)

	== Storage and directories ==		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.

Borg at 07:56, 22 February 2018

2018-02-22T07:56:04Z

← Older revision		Revision as of 07:56, 22 February 2018
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	== Job submission ==		== Job submission ==
	* Job submission using python		* Job submission using python
	* will be updated soon...		** will be updated soon...
	* Job submission using slurm		* Job submission using slurm
	* Write a text file (job bash script) containing submission options and the list of commands to be executed (run.sh)		*# Write a text file (job bash script) containing submission options and the list of commands to be executed (run.sh)
	* Submit the job with the ``sbatch run.sh`` command		*# Submit the job with the ``sbatch run.sh`` command
	* Check job status with ``squeue -u $USER`` command		*# Check job status with ``squeue -u $USER`` command

	== Applications ==		== Applications ==

Borg at 07:55, 22 February 2018

2018-02-22T07:55:10Z

← Older revision		Revision as of 07:55, 22 February 2018
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	# MOAB Quick Start Guide		= MOAB Quick Start Guide =

	## MOAB description		== MOAB description ==
	MOAB is a cluster with 64 compute nodes based on Intel Harpertown processor and		MOAB is a cluster with 64 compute nodes based on Intel Harpertown processor and
	interconnected with Infiniband network. Has a peak performance of 3.6 TFlops. Nodes have 8 cores, 64 GB memory and 1 TB		interconnected with Infiniband network. Has a peak performance of 3.6 TFlops. Nodes have 8 cores, 64 GB memory and 1 TB
	of local disk storage.		of local disk storage.

	## Connecting to the system		== Connecting to the system ==
	* To access MOAB cluster, a SSH client (Secure Shell) must be used.		* To access MOAB cluster, a SSH client (Secure Shell) must be used.
	* For security reasons, access to our computing servers is restricted to Israeli university researchers only.		* For security reasons, access to our computing servers is restricted to Israeli university researchers only.
Line 12:		Line 12:
	* Accessible through SSH protocol at hostname moab.iucc.ac.il. moab.iucc.ac.il is a prep area, where users may edit, compile, perform file management, and submit batch jobs.		* Accessible through SSH protocol at hostname moab.iucc.ac.il. moab.iucc.ac.il is a prep area, where users may edit, compile, perform file management, and submit batch jobs.

	## Job submission		== Job submission ==
	* Job submission using python		* Job submission using python
	* will be updated soon...		* will be updated soon...
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	* Check job status with ``squeue -u $USER`` command		* Check job status with ``squeue -u $USER`` command

	## Applications		== Applications ==
	Applications use is configured through the “module” command:		Applications use is configured through the “module” command:
	* Available applications: ``module avail``		* Available applications: ``module avail``
Line 28:		Line 28:
	* Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)		* Follow instructions on [EasyBuild CLI documentation](http://easybuild.readthedocs.io/en/latest/Using_the_EasyBuild_command_line.html)

	## Storage and directories		== Storage and directories ==
	* Each user has a local scratch disk on the node to work with.		* Each user has a local scratch disk on the node to work with.